Bioconductor RNA seq

Showing : RNA seq • reset

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3.4k

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deseq2 mahattan plot RNA Seq

updated 4.3 years ago by bernatgel ▴ 150 • written 5.2 years ago by adeler001 • 0

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4.0k

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batch effect limma rna seq DE

updated 4.7 years ago by Steve Lianoglou ★ 13k • written 4.7 years ago by svlachavas ▴ 840

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971

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RNA seq cpm

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by isabel.pieterse • 0

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1.2k

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sgseq alternative splicing rna seq

updated 5 months ago by Sara • 0 • written 5.1 years ago by 116100016 • 0

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1.1k

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edger RNA Seq

updated 5.1 years ago by James W. MacDonald 67k • written 5.2 years ago by abf ▴ 30

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664

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rna seq

5.2 years ago adeler001 • 0

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1.0k

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rna seq SGSeq Alternative splicing

updated 5.3 years ago by Leonard Goldstein ▴ 260 • written 5.3 years ago by 116100016 • 0

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681

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deseq2 likelihood ratio rna seq wald test

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by adeler001 • 0

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1.5k

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limma voom RNA Seq Time-course experiments

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by mahes.muniandy • 0

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1.3k

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RNA seq wgcna

updated 5.6 years ago by Peter Langfelder ★ 3.0k • written 5.6 years ago by agustin.gonvi ▴ 20

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2.3k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.7 years ago Mozart ▴ 30

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1.9k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.9 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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